IL_4V6K_098

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

4V6K|1|AB|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_098 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1614

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4V6K|1|AB|C|2636
4V6K|1|AB|U|2637
4V6K|1|AB|G|2638
4V6K|1|AB|A|2639
4V6K|1|AB|G|2640
*
4V6K|1|AB|C|2774
4V6K|1|AB|G|2775
4V6K|1|AB|A|2776
4V6K|1|AB|G|2777
4V6K|1|AB|A|2778
4V6K|1|AB|U|2779
4V6K|1|AB|G|2780
4V6K|1|AB|A|2781
4V6K|1|AB|G|2782

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AK

50S ribosomal protein L13