IL_4V6K_107

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_107 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.2291

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V6K|1|AB|U|2847
4V6K|1|AB|G|2848
4V6K|1|AB|U|2849
4V6K|1|AB|A|2850
4V6K|1|AB|A|2851
4V6K|1|AB|G|2852
*
4V6K|1|AB|U|2865
4V6K|1|AB|U|2866
4V6K|1|AB|G|2867
4V6K|1|AB|A|2868
4V6K|1|AB|G|2869

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AO

50S ribosomal protein L17

Chain AQ

50S ribosomal protein L19