3D structure

PDB id
4V6K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural insights into cognate vs. near-cognate discrimination during decoding.
Experimental method
ELECTRON MICROSCOPY
Resolution
8.25 Å

Loop

Sequence
GAAGGG*CAUUGAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6K_129 not in the Motif Atlas
Homologous match to IL_5J7L_023
Geometric discrepancy: 0.3094
The information below is about IL_5J7L_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_70801.1
Basepair signature
cWW-cWW-L-R-tWW-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

4V6K|1|BA|G|450
4V6K|1|BA|A|451
4V6K|1|BA|A|452
4V6K|1|BA|G|453
4V6K|1|BA|G|454
4V6K|1|BA|G|455
*
4V6K|1|BA|C|477
4V6K|1|BA|A|478
4V6K|1|BA|U|479
4V6K|1|BA|U|480
4V6K|1|BA|G|481
4V6K|1|BA|A|482
4V6K|1|BA|C|483

Current chains

Chain BA
16S ribosomal RNA

Nearby chains

Chain BT
30S ribosomal protein S16

Coloring options:


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