IL_4V6K_130

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_130 not in the Motif Atlas

Homologous match to IL_6CZR_132

Geometric discrepancy: 0.1596

The information below is about IL_6CZR_132

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.3

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4V6K|1|BA|C|504
4V6K|1|BA|G|505
4V6K|1|BA|G|506
4V6K|1|BA|C|507
4V6K|1|BA|U|508
4V6K|1|BA|A|509
4V6K|1|BA|A|510
4V6K|1|BA|C|511
*
4V6K|1|BA|G|540
4V6K|1|BA|G|541

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BH

30S ribosomal protein S4

Chain BP

30S ribosomal protein S12