IL_4V6K_148

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

UGG*CACA

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_148 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.3902

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4V6K|1|BA|U|952
4V6K|1|BA|G|953
4V6K|1|BA|G|954
*
4V6K|1|BA|C|1226
4V6K|1|BA|A|1227
4V6K|1|BA|C|1228
4V6K|1|BA|A|1229

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BE

Transfer RNA; tRNA

Chain BQ

30S ribosomal protein S13

Chain BW

30S ribosomal protein S19