IL_4V6K_153

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

4V6K|1|BA|C|1200, 4V6K|1|BA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_153 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.2246

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V6K|1|BA|G|1057
4V6K|1|BA|G|1058
*
4V6K|1|BA|U|1199
4V6K|1|BA|C|1200
4V6K|1|BA|A|1201
4V6K|1|BA|U|1202
4V6K|1|BA|C|1203

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BG

30S ribosomal protein S3

Chain BN

30S ribosomal protein S10

Chain BR

30S ribosomal protein S14