IL_4V6K_163

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V6K|1|BA|C|1400, 4V6K|1|BA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_163 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1249

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

4V6K|1|BA|C|1399
4V6K|1|BA|C|1400
4V6K|1|BA|G|1401
*
4V6K|1|BA|C|1501
4V6K|1|BA|A|1502
4V6K|1|BA|A|1503
4V6K|1|BA|G|1504

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BD

mRNA

Chain BE

Transfer RNA; tRNA

Chain BY

30S ribosomal protein S21