IL_4V6K_173

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

4V6K|1|AB|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_173 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.423

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

4V6K|1|AB|C|1319
4V6K|1|AB|C|1320
4V6K|1|AB|A|1321
4V6K|1|AB|A|1322
4V6K|1|AB|C|1323
*
4V6K|1|AB|G|1331
4V6K|1|AB|G|1332
4V6K|1|AB|G|1333

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AT

50S ribosomal protein L22

Chain AU

50S ribosomal protein L23