IL_4V6L_022

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_022 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.1986

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4V6L|1|AA|C|504
4V6L|1|AA|G|505
4V6L|1|AA|G|506
4V6L|1|AA|C|507
4V6L|1|AA|U|508
4V6L|1|AA|A|509
4V6L|1|AA|A|510
4V6L|1|AA|C|511
*
4V6L|1|AA|G|540
4V6L|1|AA|G|541

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AH

30S ribosomal protein S4

Chain AP

30S ribosomal protein S12