IL_4V6L_059

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GGAGU*AUGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_059 not in the Motif Atlas

Geometric match to IL_8GLP_204

Geometric discrepancy: 0.3496

The information below is about IL_8GLP_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4V6L|1|AA|G|1416
4V6L|1|AA|G|1417
4V6L|1|AA|A|1418
4V6L|1|AA|G|1419
4V6L|1|AA|U|1420
*
4V6L|1|AA|A|1480
4V6L|1|AA|U|1481
4V6L|1|AA|G|1482
4V6L|1|AA|A|1483
4V6L|1|AA|C|1484

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain BL

50S ribosomal protein L14