IL_4V6L_063

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CGC*GUAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_063 not in the Motif Atlas

Geometric match to IL_5J7L_008

Geometric discrepancy: 0.3758

The information below is about IL_5J7L_008

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

4V6L|1|BA|C|17
4V6L|1|BA|G|18
4V6L|1|BA|C|19
*
4V6L|1|BA|G|64
4V6L|1|BA|U|65
4V6L|1|BA|A|66
4V6L|1|BA|G|67

Current chains

Chain BA

50S ribosomal RNA 5S

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA