IL_4V6L_074

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_074 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.1578

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V6L|1|BB|C|239
4V6L|1|BB|C|240
4V6L|1|BB|A|241
4V6L|1|BB|G|242
4V6L|1|BB|U|243
4V6L|1|BB|A|244
4V6L|1|BB|G|245
*
4V6L|1|BB|C|253
4V6L|1|BB|G|254
4V6L|1|BB|A|255
4V6L|1|BB|A|256
4V6L|1|BB|C|257
4V6L|1|BB|G|258

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BM

50S ribosomal protein L15

Chain Bf

50S ribosomal protein L35