IL_4V6L_078

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4V6L|1|BB|A|504, 4V6L|1|BB|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_078 not in the Motif Atlas

Geometric match to IL_7RQB_014

Geometric discrepancy: 0.202

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4V6L|1|BB|G|481
4V6L|1|BB|A|482
4V6L|1|BB|A|483
4V6L|1|BB|C|484
*
4V6L|1|BB|G|496
4V6L|1|BB|A|497
4V6L|1|BB|G|498
4V6L|1|BB|U|499
4V6L|1|BB|G|500
4V6L|1|BB|A|501
4V6L|1|BB|A|502
4V6L|1|BB|A|503
4V6L|1|BB|A|504
4V6L|1|BB|A|505
4V6L|1|BB|G|506
4V6L|1|BB|A|507
4V6L|1|BB|A|508
4V6L|1|BB|C|509

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BT

50S ribosomal protein L22

Chain BV

50S ribosomal protein L24