IL_4V6L_088

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

AUC*GAAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_088 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.2824

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

4V6L|1|BB|A|849
4V6L|1|BB|U|850
4V6L|1|BB|C|851
*
4V6L|1|BB|G|926
4V6L|1|BB|A|927
4V6L|1|BB|A|928
4V6L|1|BB|U|929

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BX

50S ribosomal protein L27

Chain Ba

50S ribosomal protein L30