IL_4V6L_109
3D structure
- PDB id
- 4V6L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural insights into cognate vs. near-cognate discrimination during decoding.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.2 Å
Loop
- Sequence
- AUAAGUAAC*GUGAAAUU
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6L_109 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.2723
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84694.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V6L|1|BB|A|1262
4V6L|1|BB|U|1263
4V6L|1|BB|A|1264
4V6L|1|BB|A|1265
4V6L|1|BB|G|1266
4V6L|1|BB|U|1267
4V6L|1|BB|A|1268
4V6L|1|BB|A|1269
4V6L|1|BB|C|1270
*
4V6L|1|BB|G|2010
4V6L|1|BB|U|2011
4V6L|1|BB|G|2012
4V6L|1|BB|A|2013
4V6L|1|BB|A|2014
4V6L|1|BB|A|2015
4V6L|1|BB|U|2016
4V6L|1|BB|U|2017
Current chains
- Chain BB
- 50S ribosomal RNA 23S
Nearby chains
- Chain BO
- 50S ribosomal protein L17
- Chain BR
- 50S ribosomal protein L20
- Chain BT
- 50S ribosomal protein L22
- Chain Bc
- 50S ribosomal protein L32
Coloring options: