IL_4V6L_143

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

4V6L|1|BB|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_143 not in the Motif Atlas

Geometric match to IL_4WF9_081

Geometric discrepancy: 0.1687

The information below is about IL_4WF9_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4V6L|1|BB|A|2070
4V6L|1|BB|A|2071
*
4V6L|1|BB|U|2438
4V6L|1|BB|A|2439
4V6L|1|BB|C|2440
4V6L|1|BB|U|2441

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain AE

Transfer RNA; tRNA

Chain BD

50S ribosomal protein L2