IL_4V6L_144

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_144 not in the Motif Atlas

Homologous match to IL_7A0S_077

Geometric discrepancy: 0.2052

The information below is about IL_7A0S_077

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V6L|1|BB|U|2081
4V6L|1|BB|A|2082
4V6L|1|BB|G|2083
*
4V6L|1|BB|U|2236
4V6L|1|BB|G|2237
4V6L|1|BB|G|2238
4V6L|1|BB|G|2239

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BD

50S ribosomal protein L2

Chain BY

50S ribosomal protein L28