IL_4V6L_147

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GAUG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_147 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2709

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V6L|1|BB|G|2107
4V6L|1|BB|A|2108
4V6L|1|BB|U|2109
4V6L|1|BB|G|2110
*
4V6L|1|BB|C|2179
4V6L|1|BB|U|2180
4V6L|1|BB|U|2181
4V6L|1|BB|U|2182

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain AO

30S ribosomal protein S11

Chain BC

50S ribosomal protein L1