IL_4V6L_149

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GUUG*UGC

Length

7 nucleotides

Bulged bases

4V6L|1|BB|U|2203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_149 not in the Motif Atlas

Geometric match to IL_3KTW_002

Geometric discrepancy: 0.2477

The information below is about IL_3KTW_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

4V6L|1|BB|G|2201
4V6L|1|BB|U|2202
4V6L|1|BB|U|2203
4V6L|1|BB|G|2204
*
4V6L|1|BB|U|2220
4V6L|1|BB|G|2221
4V6L|1|BB|C|2222

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BD

50S ribosomal protein L2

Chain BI

50S ribosomal protein L9

Chain BY

50S ribosomal protein L28