IL_4V6L_154

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_154 not in the Motif Atlas

Geometric match to IL_4V9F_084

Geometric discrepancy: 0.345

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

4V6L|1|BB|A|2459
4V6L|1|BB|U|2460
4V6L|1|BB|A|2461
*
4V6L|1|BB|U|2489
4V6L|1|BB|G|2490
4V6L|1|BB|U|2491
4V6L|1|BB|U|2492
4V6L|1|BB|U|2493

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BN

50S ribosomal protein L16