IL_4V6L_158

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_158 not in the Motif Atlas

Homologous match to IL_4WF9_097

Geometric discrepancy: 0.1266

The information below is about IL_4WF9_097

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

4V6L|1|BB|U|2522
4V6L|1|BB|G|2523
*
4V6L|1|BB|C|2540
4V6L|1|BB|A|2541
4V6L|1|BB|A|2542
4V6L|1|BB|G|2543

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BK

50S ribosomal protein L13

Chain Bg

50S ribosomal protein L36