IL_4V6L_176

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

AGAG*CUCCU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_176 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.397

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V6L|1|BB|A|42
4V6L|1|BB|G|43
4V6L|1|BB|A|44
4V6L|1|BB|G|45
*
4V6L|1|BB|C|433
4V6L|1|BB|U|434
4V6L|1|BB|C|435
4V6L|1|BB|C|436
4V6L|1|BB|U|437

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains