IL_4V6M_028

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

4V6M|1|AA|A|572, 4V6M|1|AA|A|573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_028 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1327

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

4V6M|1|AA|C|569
4V6M|1|AA|G|570
4V6M|1|AA|U|571
4V6M|1|AA|A|572
4V6M|1|AA|A|573
4V6M|1|AA|A|574
4V6M|1|AA|G|575
*
4V6M|1|AA|C|880
4V6M|1|AA|G|881

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AE

30S ribosomal protein S5

Chain AH

30S ribosomal protein S8

Chain AL

30S ribosomal protein S12