IL_4V6M_038

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_038 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.112

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

4V6M|1|AA|G|774
4V6M|1|AA|G|775
4V6M|1|AA|G|776
4V6M|1|AA|A|777
4V6M|1|AA|G|778
*
4V6M|1|AA|U|804
4V6M|1|AA|C|805

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain B6

50S ribosomal protein L2

Chain B8

Large subunit ribosomal RNA; LSU rRNA