IL_4V6M_040

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_040 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0998

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V6M|1|AA|G|887
4V6M|1|AA|G|888
4V6M|1|AA|A|889
4V6M|1|AA|G|890
4V6M|1|AA|U|891
4V6M|1|AA|A|892
4V6M|1|AA|C|893
4V6M|1|AA|G|894
*
4V6M|1|AA|U|905
4V6M|1|AA|A|906
4V6M|1|AA|A|907
4V6M|1|AA|A|908
4V6M|1|AA|A|909
4V6M|1|AA|C|910

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain B8

Large subunit ribosomal RNA; LSU rRNA