IL_4V6M_052

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_052 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.1555

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

4V6M|1|AA|G|1124
4V6M|1|AA|U|1125
4V6M|1|AA|U|1126
4V6M|1|AA|G|1127
4V6M|1|AA|C|1128
*
4V6M|1|AA|G|1144
4V6M|1|AA|A|1145
4V6M|1|AA|A|1146
4V6M|1|AA|C|1147
4V6M|1|AA|U|1148
4V6M|1|AA|C|1149

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AI

30S ribosomal protein S9

Chain AJ

30S ribosomal protein S10