3D structure

PDB id
4V6M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the ribosome-SecYE complex in the membrane environment
Experimental method
ELECTRON MICROSCOPY
Resolution
7.1 Å

Loop

Sequence
GUUGC*GAACUC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6M_052 not in the Motif Atlas
Homologous match to IL_5J7L_051
Geometric discrepancy: 0.1555
The information below is about IL_5J7L_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_06691.1
Basepair signature
cWW-cWS-L-R-L-R-cWW-L
Number of instances in this motif group
2

Unit IDs

4V6M|1|AA|G|1124
4V6M|1|AA|U|1125
4V6M|1|AA|U|1126
4V6M|1|AA|G|1127
4V6M|1|AA|C|1128
*
4V6M|1|AA|G|1144
4V6M|1|AA|A|1145
4V6M|1|AA|A|1146
4V6M|1|AA|C|1147
4V6M|1|AA|U|1148
4V6M|1|AA|C|1149

Current chains

Chain AA
16S RIBOSOMAL RNA

Nearby chains

Chain AC
30S ribosomal protein S3
Chain AI
30S ribosomal protein S9
Chain AJ
30S ribosomal protein S10

Coloring options:


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