IL_4V6M_071

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_071 not in the Motif Atlas

Homologous match to IL_8P9A_366

Geometric discrepancy: 0.5558

The information below is about IL_8P9A_366

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

4V6M|1|B7|C|30
4V6M|1|B7|C|31
*
4V6M|1|B7|G|51
4V6M|1|B7|A|52
4V6M|1|B7|A|53
4V6M|1|B7|G|54

Current chains

Chain B7

5S RIBOSOMAL RNA

Nearby chains

Chain BF

50S ribosomal protein L5

Chain BO

50S ribosomal protein L18