IL_4V6M_089

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V6M|1|B8|G|801, 4V6M|1|B8|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_089 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1094

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V6M|1|B8|G|674
4V6M|1|B8|A|675
4V6M|1|B8|A|676
4V6M|1|B8|A|677
4V6M|1|B8|C|678
*
4V6M|1|B8|G|799
4V6M|1|B8|A|800
4V6M|1|B8|G|801
4V6M|1|B8|A|802
4V6M|1|B8|U|803
4V6M|1|B8|A|804
4V6M|1|B8|G|805
4V6M|1|B8|C|806

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15