IL_4V6M_092

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_092 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.1301

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4V6M|1|B8|U|703
4V6M|1|B8|G|704
4V6M|1|B8|A|705
4V6M|1|B8|A|706
4V6M|1|B8|G|707
*
4V6M|1|B8|U|724
4V6M|1|B8|G|725
4V6M|1|B8|G|726
4V6M|1|B8|A|727
4V6M|1|B8|G|728

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain B6

50S ribosomal protein L2