IL_4V6M_107

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

4V6M|1|B8|A|1010

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_107 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.1112

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4V6M|1|B8|U|1004
4V6M|1|B8|C|1005
4V6M|1|B8|C|1006
4V6M|1|B8|C|1007
4V6M|1|B8|A|1008
4V6M|1|B8|A|1009
4V6M|1|B8|A|1010
4V6M|1|B8|G|1011
*
4V6M|1|B8|C|1150
4V6M|1|B8|A|1151

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain BJ

50S ribosomal protein L13

Chain BQ

50S ribosomal protein L20