3D structure

PDB id
4V6M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the ribosome-SecYE complex in the membrane environment
Experimental method
ELECTRON MICROSCOPY
Resolution
7.1 Å

Loop

Sequence
CUAU*AAAUG
Length
9 nucleotides
Bulged bases
4V6M|1|B8|U|1554
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6M_127 not in the Motif Atlas
Homologous match to IL_7A0S_053
Geometric discrepancy: 0.4077
The information below is about IL_7A0S_053
Detailed Annotation
tSH-tHW
Broad Annotation
No text annotation
Motif group
IL_99646.2
Basepair signature
cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V6M|1|B8|C|1437
4V6M|1|B8|U|1438
4V6M|1|B8|A|1439
4V6M|1|B8|U|1440
*
4V6M|1|B8|A|1551
4V6M|1|B8|A|1552
4V6M|1|B8|A|1553
4V6M|1|B8|U|1554
4V6M|1|B8|G|1555

Current chains

Chain B8
23S RIBOSOMAL RNA

Nearby chains

No other chains within 10Å

Coloring options:


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