IL_4V6M_129

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_129 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.1818

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V6M|1|B8|U|1474
4V6M|1|B8|G|1475
4V6M|1|B8|U|1476
4V6M|1|B8|A|1477
4V6M|1|B8|G|1478
*
4V6M|1|B8|U|1513
4V6M|1|B8|G|1514
4V6M|1|B8|A|1515
4V6M|1|B8|G|1516
4V6M|1|B8|G|1517

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains