IL_4V6M_155

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_155 not in the Motif Atlas

Geometric match to IL_1NBS_006

Geometric discrepancy: 0.2528

The information below is about IL_1NBS_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V6M|1|B8|C|2103
4V6M|1|B8|C|2104
4V6M|1|B8|U|2105
*
4V6M|1|B8|A|2184
4V6M|1|B8|U|2185
4V6M|1|B8|G|2186

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain B5

50S ribosomal protein L1