IL_4V6M_156

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

AUG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_156 not in the Motif Atlas

Homologous match to IL_3U4M_001

Geometric discrepancy: 0.264

The information below is about IL_3U4M_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4V6M|1|B8|A|2108
4V6M|1|B8|U|2109
4V6M|1|B8|G|2110
*
4V6M|1|B8|C|2179
4V6M|1|B8|U|2180
4V6M|1|B8|U|2181

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain B5

50S ribosomal protein L1