IL_4V6M_159

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

AAU*AGGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_159 not in the Motif Atlas

Homologous match to IL_5J7L_332

Geometric discrepancy: 0.1364

The information below is about IL_5J7L_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

4V6M|1|B8|A|2297
4V6M|1|B8|A|2298
4V6M|1|B8|U|2299
*
4V6M|1|B8|A|2317
4V6M|1|B8|G|2318
4V6M|1|B8|G|2319
4V6M|1|B8|U|2320
4V6M|1|B8|U|2321

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BF

50S ribosomal protein L5