IL_4V6N_011

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_011 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.2088

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V6N|1|AB|C|239
4V6N|1|AB|C|240
4V6N|1|AB|A|241
4V6N|1|AB|G|242
4V6N|1|AB|U|243
4V6N|1|AB|A|244
4V6N|1|AB|G|245
*
4V6N|1|AB|C|253
4V6N|1|AB|G|254
4V6N|1|AB|A|255
4V6N|1|AB|A|256
4V6N|1|AB|C|257
4V6N|1|AB|G|258

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain A6

50S ribosomal protein L35

Chain AN

50S ribosomal protein L15