IL_4V6N_016

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4V6N|1|AB|A|504, 4V6N|1|AB|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_016 not in the Motif Atlas

Geometric match to IL_7RQB_014

Geometric discrepancy: 0.1603

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4V6N|1|AB|G|481
4V6N|1|AB|A|482
4V6N|1|AB|A|483
4V6N|1|AB|C|484
*
4V6N|1|AB|G|496
4V6N|1|AB|A|497
4V6N|1|AB|G|498
4V6N|1|AB|U|499
4V6N|1|AB|G|500
4V6N|1|AB|A|501
4V6N|1|AB|A|502
4V6N|1|AB|A|503
4V6N|1|AB|A|504
4V6N|1|AB|A|505
4V6N|1|AB|G|506
4V6N|1|AB|A|507
4V6N|1|AB|A|508
4V6N|1|AB|C|509

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AU

50S ribosomal protein L22

Chain AW

50S ribosomal protein L24