IL_4V6N_021

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V6N|1|AB|G|801, 4V6N|1|AB|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_021 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.2382

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V6N|1|AB|G|674
4V6N|1|AB|A|675
4V6N|1|AB|A|676
4V6N|1|AB|A|677
4V6N|1|AB|C|678
*
4V6N|1|AB|G|799
4V6N|1|AB|A|800
4V6N|1|AB|G|801
4V6N|1|AB|A|802
4V6N|1|AB|U|803
4V6N|1|AB|A|804
4V6N|1|AB|G|805
4V6N|1|AB|C|806

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AN

50S ribosomal protein L15