IL_4V6N_030

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_030 not in the Motif Atlas

Homologous match to IL_7RQB_028

Geometric discrepancy: 0.19

The information below is about IL_7RQB_028

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

4V6N|1|AB|G|862
4V6N|1|AB|A|863
*
4V6N|1|AB|U|913
4V6N|1|AB|G|914
4V6N|1|AB|C|915

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AA

5S ribosomal RNA; 5S rRNA

Chain AO

50S ribosomal protein L16

Chain AY

50S ribosomal protein L27