IL_4V6N_042

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_042 not in the Motif Atlas

Homologous match to IL_5J7L_283

Geometric discrepancy: 0.4151

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V6N|1|AB|G|1038
4V6N|1|AB|A|1039
4V6N|1|AB|A|1040
4V6N|1|AB|G|1041
*
4V6N|1|AB|C|1114
4V6N|1|AB|G|1115
4V6N|1|AB|G|1116
4V6N|1|AB|C|1117

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AH

50S ribosomal protein L6

Chain AO

50S ribosomal protein L16

Chain AX

50S ribosomal protein L25