IL_4V6N_046

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CGUU*AAGUG

Length

9 nucleotides

Bulged bases

4V6N|1|AB|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_046 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3876

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V6N|1|AB|C|1196
4V6N|1|AB|G|1197
4V6N|1|AB|U|1198
4V6N|1|AB|U|1199
*
4V6N|1|AB|A|1246
4V6N|1|AB|A|1247
4V6N|1|AB|G|1248
4V6N|1|AB|U|1249
4V6N|1|AB|G|1250

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AN

50S ribosomal protein L15

Chain AS

50S ribosomal protein L20