IL_4V6N_056

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

4V6N|1|AB|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_056 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.4953

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4V6N|1|AB|G|1432
4V6N|1|AB|A|1433
4V6N|1|AB|A|1434
4V6N|1|AB|G|1435
*
4V6N|1|AB|C|1557
4V6N|1|AB|C|1558
4V6N|1|AB|U|1559
4V6N|1|AB|G|1560
4V6N|1|AB|C|1561

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2