IL_4V6N_062

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_062 not in the Motif Atlas

Homologous match to IL_5J7L_303

Geometric discrepancy: 0.3013

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

4V6N|1|AB|C|1526
4V6N|1|AB|G|1527
4V6N|1|AB|A|1528
4V6N|1|AB|G|1529
*
4V6N|1|AB|U|1542
4V6N|1|AB|G|1543
4V6N|1|AB|A|1544
4V6N|1|AB|A|1545
4V6N|1|AB|G|1546

Current chains

Chain AB

23S ribosomal RNA

Nearby chains