3D structure

PDB id
4V6N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.1 Å

Loop

Sequence
CC*GCG
Length
5 nucleotides
Bulged bases
4V6N|1|AB|C|1732
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6N_070 not in the Motif Atlas
Geometric match to IL_5J7L_311
Geometric discrepancy: 0.3935
The information below is about IL_5J7L_311
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_61258.15
Basepair signature
cWW-L-cWW
Number of instances in this motif group
41

Unit IDs

4V6N|1|AB|C|1727
4V6N|1|AB|C|1728
*
4V6N|1|AB|G|1731
4V6N|1|AB|C|1732
4V6N|1|AB|G|1733

Current chains

Chain AB
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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