IL_4V6N_086

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GGUG*CAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_086 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3242

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

4V6N|1|AB|G|2120
4V6N|1|AB|G|2121
4V6N|1|AB|U|2122
4V6N|1|AB|G|2123
*
4V6N|1|AB|C|2175
4V6N|1|AB|A|2176
4V6N|1|AB|C|2177

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L1