3D structure

PDB id
4V6N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.1 Å

Loop

Sequence
GGUG*CAC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6N_086 not in the Motif Atlas
Geometric match to IL_5TBW_064
Geometric discrepancy: 0.3242
The information below is about IL_5TBW_064
Detailed Annotation
Other IL
Broad Annotation
Other IL
Motif group
IL_15698.1
Basepair signature
cWW-tSH-cSH-cWW
Number of instances in this motif group
9

Unit IDs

4V6N|1|AB|G|2120
4V6N|1|AB|G|2121
4V6N|1|AB|U|2122
4V6N|1|AB|G|2123
*
4V6N|1|AB|C|2175
4V6N|1|AB|A|2176
4V6N|1|AB|C|2177

Current chains

Chain AB
23S ribosomal RNA

Nearby chains

Chain AC
50S ribosomal protein L1

Coloring options:


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