IL_4V6N_101

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

4V6N|1|AB|G|2780, 4V6N|1|AB|A|2781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_101 not in the Motif Atlas

Homologous match to IL_4WF9_099

Geometric discrepancy: 0.2938

The information below is about IL_4WF9_099

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4V6N|1|AB|C|2636
4V6N|1|AB|U|2637
4V6N|1|AB|G|2638
4V6N|1|AB|A|2639
4V6N|1|AB|G|2640
*
4V6N|1|AB|C|2774
4V6N|1|AB|G|2775
4V6N|1|AB|A|2776
4V6N|1|AB|G|2777
4V6N|1|AB|A|2778
4V6N|1|AB|U|2779
4V6N|1|AB|G|2780
4V6N|1|AB|A|2781
4V6N|1|AB|G|2782

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AL

50S ribosomal protein L13