IL_4V6N_102

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_102 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.5213

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V6N|1|AB|C|2652
4V6N|1|AB|U|2653
4V6N|1|AB|A|2654
4V6N|1|AB|G|2655
4V6N|1|AB|U|2656
4V6N|1|AB|A|2657
4V6N|1|AB|C|2658
*
4V6N|1|AB|G|2663
4V6N|1|AB|G|2664
4V6N|1|AB|A|2665
4V6N|1|AB|C|2666
4V6N|1|AB|C|2667
4V6N|1|AB|G|2668

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AH

50S ribosomal protein L6