IL_4V6N_111

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UGAA*UUA

Length

7 nucleotides

Bulged bases

4V6N|1|BA|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_111 not in the Motif Atlas

Geometric match to IL_4V88_472

Geometric discrepancy: 0.2521

The information below is about IL_4V88_472

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V6N|1|BA|U|30
4V6N|1|BA|G|31
4V6N|1|BA|A|32
4V6N|1|BA|A|33
*
4V6N|1|BA|U|551
4V6N|1|BA|U|552
4V6N|1|BA|A|553

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BO

30S ribosomal protein S12