IL_4V6N_125

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

4V6N|1|BA|U|244, 4V6N|1|BA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_125 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1829

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V6N|1|BA|G|242
4V6N|1|BA|A|243
4V6N|1|BA|U|244
4V6N|1|BA|U|245
4V6N|1|BA|A|246
4V6N|1|BA|G|247
*
4V6N|1|BA|C|277
4V6N|1|BA|G|278
4V6N|1|BA|A|279
4V6N|1|BA|C|280
4V6N|1|BA|G|281
4V6N|1|BA|A|282
4V6N|1|BA|U|283
4V6N|1|BA|C|284

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BO

30S ribosomal protein S12

Chain BT

30S ribosomal protein S17