IL_4V6N_136

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

AAG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_136 not in the Motif Atlas

Geometric match to IL_7KGA_006

Geometric discrepancy: 0.2821

The information below is about IL_7KGA_006

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

4V6N|1|BA|A|460
4V6N|1|BA|A|461
4V6N|1|BA|G|462
*
4V6N|1|BA|C|470
4V6N|1|BA|U|471

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BS

30S ribosomal protein S16